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Displaying items by tag: eDNA

Environmental DNA, known as eDNA — one of the most cutting-edge ways to measure ocean health and biodiversity — was collected during The Ocean Race 2022-23 in a world first for racing boats.

11th Hour Racing Team, winners of the six-month long round-the-world race, took samples during the 5,550-nautical-mile Leg 4 from Itajai in Brazil to Newport in Rhode Island, USA in a pioneering initiative of The Ocean Race’s science programme, which aims to support understanding about the state of the seas.

Twenty-seven water samples were gathered between 23 April and 10 May this year and later analysed by the Cawthron Institute, New Zealand’s largest independent science organisation. Each sample included genetic material contained in microbes or shed by thousands of marine species through their waste products and skin cells.

Analysis of this eDNA gives a comprehensive snapshot of the presence and diversity of these species with high accuracy. These data are valuable for a number of reasons, including helping to track endangered species, monitoring diseases and pathogens. And when samples are compared over time, eDNA can provide insights into how the climate crisis is affecting marine life, for example, by shifting their geographic range.

Among the key findings of The Ocean Race eDNA collection was a striking correlation between the abundance of ocean bacteria (Pseudomonas and Acidobacter) that break down plastic and latitude, with analysis showing the highest levels of the bacteria (meaning greater plastic degradation) at lower latitudes near Brazil’s coastline.

Amory Ross lead the eDNA sampling onboard 11th Hour Racing Team | Credit: Amory Ross/11th Hour Racing/The Ocean RaceAmory Ross lead the eDNA sampling onboard 11th Hour Racing Team | Credit: Amory Ross/11th Hour Racing/The Ocean Race

While data from a single boat means that findings aren’t conclusive, The Ocean Race says this discovery highlights the powerful role of this type of eDNA technology and the need for further research. Understanding more about the geographic spread of these bacteria could provide valuable insights to help fight the marine plastic crisis.

Analysis also found that parasitic bacteria (exo or intracellular parasites) — which can be a threat to the health of other species, including humans — are strongly linked with increased sea surface temperature and longitude, with higher abundances closer to landmasses.

With record-breaking ocean temperatures documented in recent months, the influence of changing ocean temperatures on pathogenic microorganisms is another crucial area requiring further research.

Xavier Pochon, team leader of molecular surveillance at the Cawthron Institute and associate professor at the University of Auckland said: “We’re very excited about the data collected during The Ocean Race, particularly those linked with pathogens and plastic degraders. These are interesting findings because very little is known about their distribution and ecology across large latitudinal gradients.

“Our eDNA collection system on racing boats offers significant benefits over traditional research methods as it allows scientists to audit biodiversity from across the tree of life, more rapidly, cheaply and with minimum hands-on time for the sailors. We are looking forward to equipping many more racing boats in the future and propelling our knowledge of marine life into uncharted waters.”

Onboard 11th Hour Racing Team: three eDNA filters from the third sample set, all done and ready for processing with date and time recorded on the bags | Credit: Amory Ross/11th Hour Racing/The Ocean RaceOnboard 11th Hour Racing Team: three eDNA filters from the third sample set, all done and ready for processing with date and time recorded on the bags | Credit: Amory Ross/11th Hour Racing/The Ocean Race

As part of The Ocean Race’s science programme — one of the pillars of the Racing with Purpose sustainability programme that was created with premier partner 11th Hour Racing — the data collection was trialled across one leg of the 32,000nm (60,000 km) race, spanning a latitude of 27 degrees to 39 degrees, to test the feasibility of gathering eDNA on racing boats.

11th Hour Racing Team gathered the samples through an onboard OceanPack: a specialised instrument that measures a range of ocean data, including salinity, temperature, carbon dioxide, oxygen and trace elements.

The equipment worked automatically and continuously throughout the race; eDNA was sampled through the OceanPack — the vessel's existing seawater flow-through system — which pumps two litres of water through innovative eDNA filters for later lab analysis. Trialling eDNA sampling via the OceanPack had the advantage of providing scientists with the opportunity to cross check data and look for links and correlations.

Stefan Raimund, ocean advisor at The Ocean Race said: “Each sample collected contained millions of pieces of eDNA, from single-cell organisms, all the way up to lantern fish and the elusive Moray eel, providing a fascinating snapshot of life below the waves and how it changes throughout the Atlantic Ocean.

The OceanPack is a specialised automated instrument with multiple sensors that measure a range of types of data about the ocean. 11th Hour Racing Team and Team Malizia carried the OceanPack onboard during The Ocean Race 2022-23 | Credit: Cherie Bridges/The Ocean RaceThe OceanPack is a specialised automated instrument with multiple sensors that measure a range of types of data about the ocean. 11th Hour Racing Team and Team Malizia carried the OceanPack onboard during The Ocean Race 2022-23 | Credit: Cherie Bridges/The Ocean Race

“eDNA sampling is at the forefront of biodiversity testing and is a powerful tool for understanding ocean health and how the major threats of climate change and pollution affect it. The more we know about the ocean, the more effectively we can protect it.

“Having successfully trialled the sampling during The Ocean Race 2022-23, we hope to scale it up for future races and have more boats collecting this data, including in remote and vital parts of the ocean, where even less information is available for scientists.”

The potential of eDNA testing for understanding marine biodiversity has been increasingly lauded in the last few years for providing a holistic view of biodiversity without the drawbacks of traditional research methods like catching species and aerial surveys, which can be harmful, expensive and limited. eDNA can also provide fast results, which can be vital given the urgency of the problems impacting the seas.

The data were produced using Illumina next-generation sequencing technology. Cawthron Institute, who specialise in science that supports the environment and sustainable development, was also supported by Sequench Ltd and Smith-Root.

Published in Ocean Race

Dublin Bay

Dublin Bay on the east coast of Ireland stretches over seven kilometres, from Howth Head on its northern tip to Dalkey Island in the south. It's a place most Dubliners simply take for granted, and one of the capital's least visited places. But there's more going on out there than you'd imagine.

The biggest boating centre is at Dun Laoghaire Harbour on the Bay's south shore that is home to over 1,500 pleasure craft, four waterfront yacht clubs and Ireland's largest marina.

The bay is rather shallow with many sandbanks and rocky outcrops, and was notorious in the past for shipwrecks, especially when the wind was from the east. Until modern times, many ships and their passengers were lost along the treacherous coastline from Howth to Dun Laoghaire, less than a kilometre from shore.

The Bay is a C-shaped inlet of the Irish Sea and is about 10 kilometres wide along its north-south base, and 7 km in length to its apex at the centre of the city of Dublin; stretching from Howth Head in the north to Dalkey Point in the south. North Bull Island is situated in the northwest part of the bay, where one of two major inshore sandbanks lie, and features a 5 km long sandy beach, Dollymount Strand, fronting an internationally recognised wildfowl reserve. Many of the rivers of Dublin reach the Irish Sea at Dublin Bay: the River Liffey, with the River Dodder flow received less than 1 km inland, River Tolka, and various smaller rivers and streams.

Dublin Bay FAQs

There are approximately ten beaches and bathing spots around Dublin Bay: Dollymount Strand; Forty Foot Bathing Place; Half Moon bathing spot; Merrion Strand; Bull Wall; Sandycove Beach; Sandymount Strand; Seapoint; Shelley Banks; Sutton, Burrow Beach

There are slipways on the north side of Dublin Bay at Clontarf, Sutton and on the southside at Dun Laoghaire Harbour, and in Dalkey at Coliemore and Bulloch Harbours.

Dublin Bay is administered by a number of Government Departments, three local authorities and several statutory agencies. Dublin Port Company is in charge of navigation on the Bay.

Dublin Bay is approximately 70 sq kilometres or 7,000 hectares. The Bay is about 10 kilometres wide along its north-south base, and seven km in length east-west to its peak at the centre of the city of Dublin; stretching from Howth Head in the north to Dalkey Point in the south.

Dun Laoghaire Harbour on the southside of the Bay has an East and West Pier, each one kilometre long; this is one of the largest human-made harbours in the world. There also piers or walls at the entrance to the River Liffey at Dublin city known as the Great North and South Walls. Other harbours on the Bay include Bulloch Harbour and Coliemore Harbours both at Dalkey.

There are two marinas on Dublin Bay. Ireland's largest marina with over 800 berths is on the southern shore at Dun Laoghaire Harbour. The other is at Poolbeg Yacht and Boat Club on the River Liffey close to Dublin City.

Car and passenger Ferries operate from Dublin Port to the UK, Isle of Man and France. A passenger ferry operates from Dun Laoghaire Harbour to Howth as well as providing tourist voyages around the bay.

Dublin Bay has two Islands. Bull Island at Clontarf and Dalkey Island on the southern shore of the Bay.

The River Liffey flows through Dublin city and into the Bay. Its tributaries include the River Dodder, the River Poddle and the River Camac.

Dollymount, Burrow and Seapoint beaches

Approximately 1,500 boats from small dinghies to motorboats to ocean-going yachts. The vast majority, over 1,000, are moored at Dun Laoghaire Harbour which is Ireland's boating capital.

In 1981, UNESCO recognised the importance of Dublin Bay by designating North Bull Island as a Biosphere because of its rare and internationally important habitats and species of wildlife. To support sustainable development, UNESCO’s concept of a Biosphere has evolved to include not just areas of ecological value but also the areas around them and the communities that live and work within these areas. There have since been additional international and national designations, covering much of Dublin Bay, to ensure the protection of its water quality and biodiversity. To fulfil these broader management aims for the ecosystem, the Biosphere was expanded in 2015. The Biosphere now covers Dublin Bay, reflecting its significant environmental, economic, cultural and tourism importance, and extends to over 300km² to include the bay, the shore and nearby residential areas.

On the Southside at Dun Laoghaire, there is the National Yacht Club, Royal St. George Yacht Club, Royal Irish Yacht Club and Dun Laoghaire Motor Yacht Club as well as Dublin Bay Sailing Club. In the city centre, there is Poolbeg Yacht and Boat Club. On the Northside of Dublin, there is Clontarf Yacht and Boat Club and Sutton Dinghy Club. While not on Dublin Bay, Howth Yacht Club is the major north Dublin Sailing centre.

© Afloat 2020